Genomic tRNA Database: Yarrowia lipolytica CLIB99

tRNAscan-SE Analysis of Yarrowia lipolytica CLIB99

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>> tRNAs by Isotype

>> tRNAs by Locus

>> Secondary Structures

>> tRNA Alignments

>> FASTA Seqs

>> Run Options/Stats

>> Analysis Notes

>> Genome DB

>> Genome Seq

tRNA Gene Summary



tRNAs Decoding Standard 20 AA 510
 Selenocysteine tRNAs (TCA) 0
 Possible suppressor tRNAs (CTA,TTA) 0
 tRNAs with undetermined 
 or unknown isotypes 0
 Predicted pseudogenes 0
 Total tRNAs 510
 
 
Intron Summary tRNAs with introns 
 316 Gly 
 TCC 
 11 Pro 
 AGG 
 21 Pro 
 CGG 
 2 Thr 
 CGT 
 1 Thr 
 TGT 
 3 Val 
 CAC 
 3 Ser 
 CGA 
 4 Ser 
 TGA 
 2 Ser 
 GCT 
 6 Arg 
 TCG 
 25 Leu 
 AAG 
 21 Leu 
 CAG 
 11 Leu 
 TAG 
 2 Leu 
 CAA 
 3 Phe 
 GAA 
 17 Asn 
 GTT 
 16 Lys 
 CTT 
 34 Lys 
 TTT 
 4 Asp 
 GTC 
 28 Glu 
 CTC 
 27
 His 
 GTG 
 4 Gln 
 CTG 
 14 Gln 
 TTG 
 3 Ile 
 AAT 
 26 Ile 
 TAT 
 1 Tyr 
 GTA 
 14 Trp 
 CCA 
 13  

Four Box tRNA Sets Isotype Anticodon Count Total
 Ala AGC 
 30 GGC 
   CGC 
 2 TGC 
 4 36
 Gly ACC 
   GCC 
 30 CCC 
   TCC 
 11 41
 Pro AGG 
 21 GGG 
   CGG 
 2 TGG 
 3 26
 Thr AGT 
 22 GGT 
   CGT 
 2 TGT 
 3 27
 Val AAC 
 24 GAC 
   CAC 
 8 TAC 
 2 34  Six Box tRNA Sets Isotype Anticodon Count Total
 Ser AGA 
 21 GGA 
   CGA 
 4 TGA 
 2 ACT 
   GCT 
 6   
     
   33
 Arg ACG 
 1 GCG 
   CCG 
   TCG 
 25   
     
   CCT 
 1 TCT 
 4 31
 Leu AAG 
 21 GAG 
   CAG 
 13 TAG 
 2   
     
   CAA 
 3 TAA 
 1 40
 Two Box tRNA Sets Isotype Anticodon Count Total
 Phe AAA 
   GAA 
 17   
     
   17
 Asn ATT 
   GTT 
 16   
     
   16
 Lys   
     
   CTT 
 34 TTT 
 4 38
 Asp ATC 
   GTC 
 28   
     
   28
 Glu   
     
   CTC 
 27 TTC 
 6 33
 His ATG 
   GTG 
 12   
     
   12
 Gln   
     
   CTG 
 15 TTG 
 3 18  Two Box & Other tRNA Sets Isotype Anticodon Count Total
 Ile AAT 
 26 GAT 
     
   TAT 
 1 27
 Met   
     
   CAT 
 18   
   18
 Tyr ATA 
   GTA 
 14   
     
   14
 Supres   
     
   CTA 
   TTA 
   0
 Cys ACA 
   GCA 
 8   
     
   8
 Trp   
     
   CCA 
 13   
   13
 SelCys   
     
     
   TCA 
   0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.