Genomic tRNA Database: Medicago truncatula (Aug 2007 Version 2.0)

tRNAscan-SE Analysis of Medicago truncatula (Aug 2007 Version 2.0)

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>> Genome Seq

tRNA Gene Summary



tRNAs Decoding Standard 20 AA 504
 Selenocysteine tRNAs (TCA) 1
 Possible suppressor tRNAs (CTA,TTA) 3
 tRNAs with undetermined 
 or unknown isotypes 4
 Predicted pseudogenes 104
 Total tRNAs 616
 
 
Intron Summary tRNAs with introns 
 31 Ala 
 TGC 
 1 Val 
 CAC 
 1 Ser 
 GCT 
 1 Leu 
 TAA 
 2 Asn 
 ATT 
 2 Lys 
 TTT 
 1 Glu 
 TTC 
 2 Gln 
 TTG 
 2 Ile 
 TAT 
 4 Met 
 CAT 
 5 Tyr 
 GTA 
 9 SelCys 
 TCA 
 1

Four Box tRNA Sets Isotype Anticodon Count Total
 Ala AGC 
 16 GGC 
   CGC 
 2 TGC 
 13 31
 Gly ACC 
 1 GCC 
 17 CCC 
 3 TCC 
 8 29
 Pro AGG 
 6 GGG 
   CGG 
 1 TGG 
 11 18
 Thr AGT 
 7 GGT 
 6 CGT 
 1 TGT 
 9 23
 Val AAC 
 12 GAC 
 4 CAC 
 7 TAC 
 6 29  Six Box tRNA Sets Isotype Anticodon Count Total
 Ser AGA 
 10 GGA 
 2 CGA 
 1 TGA 
 10 ACT 
   GCT 
 12   
     
   35
 Arg ACG 
 12 GCG 
   CCG 
 3 TCG 
 3   
     
   CCT 
 6 TCT 
 9 33
 Leu AAG 
 7 GAG 
   CAG 
 2 TAG 
 10   
     
   CAA 
 12 TAA 
 4 35
 Two Box tRNA Sets Isotype Anticodon Count Total
 Phe AAA 
   GAA 
 20   
     
   20
 Asn ATT 
 7 GTT 
 31   
     
   38
 Lys   
     
   CTT 
 16 TTT 
 17 33
 Asp ATC 
   GTC 
 22   
     
   22
 Glu   
     
   CTC 
 9 TTC 
 18 27
 His ATG 
   GTG 
 18   
     
   18
 Gln   
     
   CTG 
 4 TTG 
 15 19  Two Box & Other tRNA Sets Isotype Anticodon Count Total
 Ile AAT 
 18 GAT 
     
   TAT 
 6 24
 Met   
     
   CAT 
 35   
   35
 Tyr ATA 
   GTA 
 15   
     
   15
 Supres   
     
   CTA 
   TTA 
 3 3
 Cys ACA 
   GCA 
 9   
     
   9
 Trp   
     
   CCA 
 11   
   11
 SelCys   
     
     
   TCA 
 1 1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.