Genomic tRNA Database: Cryptococcus neoformans var JEC21

tRNAscan-SE Analysis of Cryptococcus neoformans var JEC21

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>> Genome DB

>> Genome Seq

tRNA Gene Summary



tRNAs Decoding Standard 20 AA 141
 Selenocysteine tRNAs (TCA) 0
 Possible suppressor tRNAs (CTA,TTA) 0
 tRNAs with undetermined 
 or unknown isotypes 0
 Predicted pseudogenes 2
 Total tRNAs 143
 
 
Intron Summary tRNAs with introns 
 132 Ala 
 AGC 
 7 Ala 
 CGC 
 2 Ala 
 TGC 
 1 Gly 
 GCC 
 5 Gly 
 CCC 
 2 Gly 
 TCC 
 1 Pro 
 AGG 
 5 Pro 
 CGG 
 1 Pro 
 TGG 
 1 Thr 
 AGT 
 5 Thr 
 CGT 
 1 Thr 
 TGT 
 1 Val 
 AAC 
 7 Val 
 CAC 
 2 Ser 
 AGA 
 6 Ser 
 CGA 
 1 Ser 
 TGA 
 1 Ser 
 GCT 
 2 Arg 
 ACG 
 3 Arg 
 CCG 
 1
 Arg 
 TCG 
 5 Arg 
 CCT 
 3 Arg 
 TCT 
 1 Leu 
 AAG 
 6 Leu 
 CAG 
 1 Leu 
 CAA 
 3 Leu 
 TAA 
 1 Phe 
 GAA 
 5 Asn 
 GTT 
 4 Lys 
 CTT 
 7 Lys 
 TTT 
 1 Asp 
 GTC 
 1 Glu 
 CTC 
 9 Glu 
 TTC 
 3 His 
 GTG 
 2 Gln 
 TTG 
 2 Ile 
 AAT 
 6 Ile 
 TAT 
 1 Met 
 CAT 
 6 Tyr 
 GTA 
 4
 Cys 
 GCA 
 3 Trp 
 CCA 
 3  

Four Box tRNA Sets Isotype Anticodon Count Total
 Ala AGC 
 7 GGC 
   CGC 
 2 TGC 
 1 10
 Gly ACC 
   GCC 
 9 CCC 
 2 TCC 
 3 14
 Pro AGG 
 5 GGG 
   CGG 
 1 TGG 
 1 7
 Thr AGT 
 5 GGT 
   CGT 
 1 TGT 
 1 7
 Val AAC 
 7 GAC 
   CAC 
 2 TAC 
   9  Six Box tRNA Sets Isotype Anticodon Count Total
 Ser AGA 
 6 GGA 
   CGA 
   TGA 
 1 ACT 
   GCT 
 1   
     
   8
 Arg ACG 
 3 GCG 
   CCG 
 1 TCG 
 5   
     
   CCT 
 3 TCT 
 1 13
 Leu AAG 
 6 GAG 
   CAG 
 1 TAG 
     
     
   CAA 
 3 TAA 
 1 11
 Two Box tRNA Sets Isotype Anticodon Count Total
 Phe AAA 
   GAA 
 5   
     
   5
 Asn ATT 
   GTT 
 4   
     
   4
 Lys   
     
   CTT 
 7 TTT 
 1 8
 Asp ATC 
   GTC 
 1   
     
   1
 Glu   
     
   CTC 
 9 TTC 
 3 12
 His ATG 
   GTG 
 4   
     
   4
 Gln   
     
   CTG 
 3 TTG 
 2 5  Two Box & Other tRNA Sets Isotype Anticodon Count Total
 Ile AAT 
 6 GAT 
     
   TAT 
 1 7
 Met   
     
   CAT 
 6   
   6
 Tyr ATA 
   GTA 
 4   
     
   4
 Supres   
     
   CTA 
   TTA 
   0
 Cys ACA 
   GCA 
 3   
     
   3
 Trp   
     
   CCA 
 3   
   3
 SelCys   
     
     
   TCA 
   0

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.