Genomic tRNA Database: Caenorhabditis remanei (Mar 2006)

tRNAscan-SE Analysis of Caenorhabditis remanei (Mar 2006)

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>> Genome DB

>> Genome Seq

tRNA Gene Summary



tRNAs Decoding Standard 20 AA 782
 Selenocysteine tRNAs (TCA) 1
 Possible suppressor tRNAs (CTA,TTA) 2
 tRNAs with undetermined 
 or unknown isotypes 9
 Predicted pseudogenes 177
 Total tRNAs 971
 
 
Intron Summary tRNAs with introns 
 55 Ala 
 GGC 
 1 Gly 
 ACC 
 4 Pro 
 AGG 
 10 Leu 
 CAA 
 12 Ile 
 TAT 
 4 Tyr 
 GTA 
 24

Four Box tRNA Sets Isotype Anticodon Count Total
 Ala AGC 
 26 GGC 
 1 CGC 
 6 TGC 
 13 46
 Gly ACC 
   GCC 
 23 CCC 
 6 TCC 
 44 73
 Pro AGG 
 8 GGG 
 4 CGG 
 6 TGG 
 36 54
 Thr AGT 
 20 GGT 
 1 CGT 
 6 TGT 
 11 38
 Val AAC 
 27 GAC 
   CAC 
 9 TAC 
 4 40  Six Box tRNA Sets Isotype Anticodon Count Total
 Ser AGA 
 17 GGA 
   CGA 
 7 TGA 
 11 ACT 
 1 GCT 
 10   
     
   46
 Arg ACG 
 28 GCG 
   CCG 
 2 TCG 
 12   
     
   CCT 
 4 TCT 
 14 60
 Leu AAG 
 22 GAG 
 1 CAG 
 5 TAG 
 8   
     
   CAA 
 12 TAA 
 6 54
 Two Box tRNA Sets Isotype Anticodon Count Total
 Phe AAA 
   GAA 
 18   
     
   18
 Asn ATT 
 1 GTT 
 22   
     
   23
 Lys   
     
   CTT 
 48 TTT 
 21 69
 Asp ATC 
   GTC 
 39   
     
   39
 Glu   
     
   CTC 
 22 TTC 
 24 46
 His ATG 
 1 GTG 
 21   
     
   22
 Gln   
     
   CTG 
 10 TTG 
 22 32  Two Box & Other tRNA Sets Isotype Anticodon Count Total
 Ile AAT 
 26 GAT 
 1   
   TAT 
 13 40
 Met   
     
   CAT 
 27   
   27
 Tyr ATA 
   GTA 
 23   
     
   23
 Supres   
     
   CTA 
   TTA 
 2 2
 Cys ACA 
   GCA 
 15   
     
   15
 Trp   
     
   CCA 
 17   
   17
 SelCys   
     
     
   TCA 
 1 1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.