Genomic tRNA Database: Candida glabrata CBS138

tRNAscan-SE Analysis of Candida glabrata CBS138

>> Main Overview

>> tRNAs by Isotype

>> tRNAs by Locus

>> Secondary Structures

>> tRNA Alignments

>> FASTA Seqs

>> Run Options/Stats

>> Analysis Notes

>> Genome DB

>> Genome Seq

tRNA Gene Summary



tRNAs Decoding Standard 20 AA 221
 Selenocysteine tRNAs (TCA) 1
 Possible suppressor tRNAs (CTA,TTA) 0
 tRNAs with undetermined 
 or unknown isotypes 0
 Predicted pseudogenes 5
 Total tRNAs 227
 
 
Intron Summary tRNAs with introns 
 45 Pro 
 TGG 
 7 Ser 
 CGA 
 1 Ser 
 GCT 
 3 Leu 
 TAG 
 4 Leu 
 CAA 
 8 Phe 
 GAA 
 6 Lys 
 TTT 
 3 Ile 
 TAT 
 2 Tyr 
 GTA 
 6 Trp 
 CCA 
 5

Four Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ala AGC 
 10 GGC 
   CGC 
   TGC 
 6 16
 Gly ACC 
   GCC 
 12 CCC 
 1 TCC 
 2 15
 Pro AGG 
 1 GGG 
   CGG 
   TGG 
 7 8
 Thr AGT 
 9 GGT 
   CGT 
 1 TGT 
 4 14
 Val AAC 
 10 GAC 
   CAC 
 1 TAC 
 3 14  Six Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Ser AGA 
 9 GGA 
   CGA 
 1 TGA 
 3 ACT 
   GCT 
 3   
     
   16
 Arg ACG 
 4 GCG 
   CCG 
 1 TCG 
     
     
   CCT 
 1 TCT 
 10 16
 Leu AAG 
   GAG 
 1 CAG 
   TAG 
 4   
     
   CAA 
 8 TAA 
 4 17
 Two Box tRNA Sets Isotype tRNA Count by Anticodon Total
 Phe AAA 
   GAA 
 7   
     
   7
 Asn ATT 
   GTT 
 10   
     
   10
 Lys   
     
   CTT 
 12 TTT 
 4 16
 Asp ATC 
   GTC 
 9   
     
   9
 Glu   
     
   CTC 
 3 TTC 
 10 13
 His ATG 
   GTG 
 7   
     
   7
 Gln   
     
   CTG 
 2 TTG 
 6 8  Two Box & Other tRNA Sets Isotype tRNA Count by Anticodon Total
 Ile AAT 
 9 GAT 
 1   
   TAT 
 2 12
 Met   
     
   CAT 
 9   
   9
 Tyr ATA 
   GTA 
 6   
     
   6
 Supres   
     
   CTA 
   TTA 
   0
 Cys ACA 
   GCA 
 3   
     
   3
 Trp   
     
   CCA 
 5   
   5
 SelCys   
     
     
   TCA 
 1 1

The Genomic tRNA Database is curated by Todd Lowe and Patricia Chan. Please email lowe@soe.ucsc.edu with any questions and comments. To submit corrections, please use our Bug and Request Tracking System.